Latest posts:

  • 13 Dec 2023 Inspecting SLURM cluster usage
  • 5 Oct 2023 Testing full use of CPUs
  • 4 Oct 2023 Testing use of multiple GPUs
  • 13 Jun 2023 Building Python manywheels
  • 4 Feb 2023 Fast.ai and its tricks
  • 30 Jan 2023 Fine tuning vision models with different input shape
  • 25 Nov 2022 Timm - Image models
  • 2 Oct 2022 VM setup for deep learning
  • 5 Jul 2022 Torch basics
  • 1 Jun 2022 An update
  • 13 Dec 2019 Modeling the cell packaging process of the 10X Chromium device
  • 10 Aug 2018 ATAC-seq power analysis
  • 6 Sep 2017 Human receptor-ligand interaction repertoire
  • 23 Nov 2016 Demo: analysis of flow cytometry data at single-cell resolution
  • 8 Oct 2016 Quantile tracks
  • 21 Jun 2016 Indel Detection From Amplicons
  • 16 Apr 2016 Enrichr
  • 28 Jan 2016 SNPs from the GWAS catalog as a LOLA region set
  • 4 Jan 2016 Survival analysis with lifelines - part 1
  • 28 Oct 2015 Pubmed wordcloud
  • 25 Aug 2015 NGS analysis objects with Python decorators
  • 31 Jul 2015 ATAC-seq library nucleosome fitting
  • 7 Jun 2015 Python objects for NGS projects and samples
  • 12 May 2015 Predicting dyads from MNase-seq data
  • 14 Apr 2015 Resources for CRISPR/Cas9 genome editing of zebrafish
  • 14 Apr 2015 Using Google cloud computing
  • 8 Apr 2015 Bioinformatics software install from fresh Ubuntu image on AWS EC2
  • 3 Apr 2015 Tools for ChIP-seq differential binding analysis
  • 14 Feb 2015 MapReduce-like operations across jobs in cluster - part II
  • 12 Feb 2015 Taxonomic distribution of interpro domains
  • 31 Jan 2015 MapReduce-like operations across jobs in cluster
  • 29 Dec 2014 Mining CosmicDB
  • 23 Nov 2014 Playing with CellProfiler
  • 18 Nov 2014 Mining drug functions into an ontology
  • 29 Oct 2014 An open science notebook