Latest posts:

10 Apr 2024 Screencasting on Ubuntu - ffmpeg FTW!

4 Apr 2024 Tips for scientific figures

13 Dec 2023 Inspecting SLURM cluster usage

5 Oct 2023 Testing full use of CPUs

4 Oct 2023 Testing use of multiple GPUs

13 Jun 2023 Building Python manywheels

4 Feb 2023 Fast.ai and its tricks

30 Jan 2023 Fine tuning vision models with different input shape

25 Nov 2022 Timm - Image models

2 Oct 2022 VM setup for deep learning

5 Jul 2022 Torch basics

1 Jun 2022 An update

13 Dec 2019 Modeling the cell packaging process of the 10X Chromium device

10 Aug 2018 ATAC-seq power analysis

6 Sep 2017 Human receptor-ligand interaction repertoire

23 Nov 2016 Demo: analysis of flow cytometry data at single-cell resolution

8 Oct 2016 Quantile tracks

21 Jun 2016 Indel Detection From Amplicons

16 Apr 2016 Enrichr

28 Jan 2016 SNPs from the GWAS catalog as a LOLA region set

4 Jan 2016 Survival analysis with lifelines - part 1

28 Oct 2015 Pubmed wordcloud

25 Aug 2015 NGS analysis objects with Python decorators

31 Jul 2015 ATAC-seq library nucleosome fitting

7 Jun 2015 Python objects for NGS projects and samples

12 May 2015 Predicting dyads from MNase-seq data

14 Apr 2015 Resources for CRISPR/Cas9 genome editing of zebrafish

14 Apr 2015 Using Google cloud computing

8 Apr 2015 Bioinformatics software install from fresh Ubuntu image on AWS EC2

3 Apr 2015 Tools for ChIP-seq differential binding analysis

14 Feb 2015 MapReduce-like operations across jobs in cluster - part II

12 Feb 2015 Taxonomic distribution of interpro domains

31 Jan 2015 MapReduce-like operations across jobs in cluster

29 Dec 2014 Mining CosmicDB

23 Nov 2014 Playing with CellProfiler

18 Nov 2014 Mining drug functions into an ontology

29 Oct 2014 An open science notebook

37 posts in total.