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Posts per tag:
notebook
- 06/01/22 An update
- 10/29/14 An open science notebook
open science
- 06/01/22 An update
- 10/29/14 An open science notebook
chemical biology
chemical screening
data mining
- 02/12/15 Taxonomic distribution of interpro domains
- 12/29/14 Mining CosmicDB
- 11/18/14 Mining drug functions into an ontology
python
- 10/05/23 Testing full use of CPUs
- 10/04/23 Testing use of multiple GPUs
- 06/13/23 Building Python manywheels
- 02/04/23 Fast.ai and its tricks
- 01/30/23 Fine tuning vision models with different input shape
- 11/25/22 Timm - Image models
- 07/05/22 Torch basics
- 12/13/19 Modeling the cell packaging process of the 10X Chromium device
- 08/10/18 ATAC-seq power analysis
- 09/06/17 Human receptor-ligand interaction repertoire
- 11/23/16 Demo: analysis of flow cytometry data at single-cell resolution
- 10/08/16 Quantile tracks
- 06/21/16 Indel Detection From Amplicons
- 04/16/16 Enrichr
- 01/28/16 SNPs from the GWAS catalog as a LOLA region set
- 01/04/16 Survival analysis with lifelines - part 1
- 10/28/15 Pubmed wordcloud
- 08/25/15 NGS analysis objects with Python decorators
- 07/31/15 ATAC-seq library nucleosome fitting
- 06/07/15 Python objects for NGS projects and samples
- 02/14/15 MapReduce-like operations across jobs in cluster - part II
- 02/12/15 Taxonomic distribution of interpro domains
- 01/31/15 MapReduce-like operations across jobs in cluster
- 12/29/14 Mining CosmicDB
- 11/23/14 Playing with CellProfiler
- 11/18/14 Mining drug functions into an ontology
cellprofiler
- 11/23/14 Playing with CellProfiler
chemical screens
- 11/23/14 Playing with CellProfiler
programming
- 10/05/23 Testing full use of CPUs
- 10/04/23 Testing use of multiple GPUs
- 06/13/23 Building Python manywheels
- 02/04/23 Fast.ai and its tricks
- 01/30/23 Fine tuning vision models with different input shape
- 11/25/22 Timm - Image models
- 07/05/22 Torch basics
- 09/06/17 Human receptor-ligand interaction repertoire
- 02/14/15 MapReduce-like operations across jobs in cluster - part II
- 01/31/15 MapReduce-like operations across jobs in cluster
slurm
- 12/13/23 Inspecting SLURM cluster usage
- 02/14/15 MapReduce-like operations across jobs in cluster - part II
- 01/31/15 MapReduce-like operations across jobs in cluster
cluster
- 02/14/15 MapReduce-like operations across jobs in cluster - part II
- 01/31/15 MapReduce-like operations across jobs in cluster
taxonomy
API
chip-seq
differential binding
tools
software
- 10/02/22 VM setup for deep learning
- 04/08/15 Bioinformatics software install from fresh Ubuntu image on AWS EC2
- 04/03/15 Tools for ChIP-seq differential binding analysis
aws
ubuntu
- 04/10/24 Screencasting on Ubuntu - ffmpeg FTW!
- 10/02/22 VM setup for deep learning
- 04/08/15 Bioinformatics software install from fresh Ubuntu image on AWS EC2
gce
- 04/14/15 Using Google cloud computing
gcs
- 04/14/15 Using Google cloud computing
crispr
literature
zebrafish
nucleosomes
- 05/12/15 Predicting dyads from MNase-seq data
dyads
- 05/12/15 Predicting dyads from MNase-seq data
MNase-seq
- 05/12/15 Predicting dyads from MNase-seq data
oop
- 08/25/15 NGS analysis objects with Python decorators
- 06/07/15 Python objects for NGS projects and samples
atac-seq
- 07/31/15 ATAC-seq library nucleosome fitting
decorators
pubmed
- 10/28/15 Pubmed wordcloud
graphics
- 10/28/15 Pubmed wordcloud
survival
gwas
variation
api
- 04/16/16 Enrichr
ngs
- 06/21/16 Indel Detection From Amplicons
visualization
- 10/08/16 Quantile tracks
bash
- 12/13/23 Inspecting SLURM cluster usage
- 10/08/16 Quantile tracks
flow cytometry
statistics
- 12/13/19 Modeling the cell packaging process of the 10X Chromium device
- 08/10/18 ATAC-seq power analysis
ATAC-seq
- 08/10/18 ATAC-seq power analysis
modeling
bayesian
inference
single-cell
deep learning
- 10/05/23 Testing full use of CPUs
- 10/04/23 Testing use of multiple GPUs
- 02/04/23 Fast.ai and its tricks
- 01/30/23 Fine tuning vision models with different input shape
- 11/25/22 Timm - Image models
- 10/02/22 VM setup for deep learning
- 07/05/22 Torch basics
pytorch
- 01/30/23 Fine tuning vision models with different input shape
- 11/25/22 Timm - Image models
- 10/02/22 VM setup for deep learning
- 07/05/22 Torch basics
setup
- 10/02/22 VM setup for deep learning
fastai
- 02/04/23 Fast.ai and its tricks
scientific illustration
- 04/04/24 Tips for scientific figures
matplotlib
- 04/04/24 Tips for scientific figures
seaborn
- 04/04/24 Tips for scientific figures
inkscape
- 04/04/24 Tips for scientific figures